ENCFF682YQJ

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR593MVW
Description: Part of ENCODE experiment ENCSR593MVW. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 267104.00 77.65 1300.66 79.5 ENST00000548801 lncRNA spleen (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 265.00 6.95 1.29 100.0 ENST00000554988 lncRNA spleen (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 996.00 26.11 4.85 100.0 ENST00000554988 lncRNA spleen (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 444.00 0.65 2.16 100.0 SNHG14-220 retained intron spleen (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 418.00 0.61 2.04 100.0 SNHG14-220 retained intron spleen (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 31.00 0.05 0.15 100.0 SNHG14-220 retained intron spleen (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 64814.00 95.21 315.61 100.0 SNHG14-220 retained intron spleen (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2918.00 99.22 14.21 100.0 TEKT4P2-201 transcribed unprocessed pseudogene spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 30775.00 76.47 149.86 91.94 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 1119.00 2.78 5.45 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 11.00 0.03 0.05 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1075.00 2.67 5.23 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1156.00 2.87 5.63 100.0 RPL4-202 retained intron spleen (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 232.00 0.24 1.13 100.0 ENST00000563103 lncRNA spleen (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 2331.00 10.98 11.35 100.0 RPL4-207 retained intron spleen (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 11489.00 54.13 55.95 100.0 RPL4-207 retained intron spleen (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 4477.00 3.23 21.80 61.17 ENST00000565336 lncRNA spleen (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 122122.00 88.01 594.67 94.99 ENST00000565336 lncRNA spleen (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 11874.00 35.74 57.82 100.0 RBMX-210 retained intron spleen (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 114.00 0.34 0.56 10.1 RBMX-210 retained intron spleen (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 8496.00 25.57 41.37 100.0 RBMX-210 retained intron spleen (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 1230.00 50.49 5.99 100.0 RPL4-214 retained intron spleen (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 537.00 2.07 2.61 100.0 POLG-DT-202 lncRNA spleen (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 11267.79 43.38 54.87 74.76 POLG-DT-202 lncRNA spleen (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 6241.22 24.03 30.39 39.81 POLG-DT-202 lncRNA spleen (Tissue)