ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 805.00 69.58 3.28 100.0 MEG8-222 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 159.00 13.74 0.65 100.0 MEG8-222 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 9800.00 11.02 39.89 97.53 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 40089.00 45.10 163.19 96.53 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 15198.00 17.10 61.87 100.0 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 12879.00 14.49 52.43 95.59 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 276.00 0.31 1.12 100.0 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 1290.00 1.45 5.25 51.19 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 681.00 0.77 2.77 76.17 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 576.00 0.65 2.34 75.2 SNHG14-224 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 5380.13 5.83 21.90 49.05 5S_rRNA.20-201 rRNA pseudogene esophagus muscularis mucosa (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 212.00 4.20 0.86 100.0 HSPA9-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 2042.00 40.48 8.31 59.53 HSPA9-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 5220.00 84.34 21.25 100.0 DNM3OS-205 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 491.00 0.07 2.00 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 3916.00 0.58 15.94 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 205.00 0.03 0.83 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 290.00 0.04 1.18 81.23 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1886.00 0.28 7.68 86.91 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 7.00 0.00 0.03 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 105.00 0.02 0.43 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 277.00 0.04 1.13 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 312256.00 46.62 1271.08 99.86 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2282.00 0.34 9.29 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 559.00 0.08 2.28 100.0 GAS5-230 retained intron esophagus muscularis mucosa (Tissue)