ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 518.00 80.06 2.11 87.21 MIR142HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 9.00 1.39 0.04 6.08 MIR142HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 167186.00 11.83 680.56 91.8 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 419.84 0.03 1.71 49.86 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 421.10 0.03 1.71 55.41 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 1239862.00 87.70 5047.04 92.38 RPL23A-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 31.00 0.72 0.13 100.0 MIR133A1HG-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 7565.00 5.95 30.79 70.63 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 18262.00 14.36 74.34 58.28 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1118.00 0.88 4.55 100.0 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 77725.00 61.10 316.39 95.08 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 18269.00 14.36 74.37 93.99 RPL17-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 93.00 19.58 0.38 26.5 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 21.00 4.42 0.09 100.0 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 7.00 1.47 0.03 100.0 ENST00000582320 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 3060.00 8.65 12.46 100.0 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 17051.53 48.22 69.41 59.04 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 12303.88 34.79 50.08 40.79 RPL17-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 1.00 0.00 0.00 100.0 SNORD43-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 286227.00 98.83 1165.13 99.9 SNORD43-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 32.00 0.01 0.13 100.0 SNORD43-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 98.00 35.51 0.40 100.0 MIR151B-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 83.00 2.50 0.34 100.0 SNORD3A-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 3725.00 81.28 15.16 100.0 SNORD92-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2614.00 17.97 10.64 100.0 NSRP1-214 protein coding esophagus muscularis mucosa (Tissue)