ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 9440.00 64.91 38.43 86.3 NSRP1-214 protein coding esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 452.00 4.07 1.84 100.0 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2922.00 26.31 11.89 95.87 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 2665.00 23.99 10.85 70.65 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2374.00 21.37 9.66 97.49 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 528.00 4.75 2.15 72.03 MIR23AHG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 2.00 28.57 0.01 100.0 MIR122HG-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 6.00 22.22 0.02 100.0 ODAD3-204 nonsense mediated decay esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 752.00 3.17 3.06 100.0 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 86.00 0.36 0.35 100.0 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 16044.00 67.67 65.31 75.87 VMP1-217 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 342.00 0.07 1.39 100.0 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 380703.45 72.40 1549.71 77.44 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 122085.42 23.22 496.97 23.64 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 4897.00 0.93 19.93 93.45 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 48.00 0.01 0.20 100.0 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 7.00 0.00 0.03 100.0 C19orf48P-203 retained intron esophagus muscularis mucosa (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 1.00 100.00 0.00 100.0 ENST00000597420 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 255.00 23.18 1.04 100.0 RPS11-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 704.00 64.00 2.87 100.0 RPS11-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 8773878.00 73.75 35715.37 75.15 CARMN-209 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 602.00 51.72 2.45 100.0 ENST00000602478 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 469.00 53.85 1.91 100.0 PPFIA1P1-201 processed pseudogene esophagus muscularis mucosa (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 440.00 39.39 1.79 100.0 SNORD114-21-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 483.00 43.24 1.97 100.0 SNORD114-21-201 snoRNA esophagus muscularis mucosa (Tissue)