ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 492.00 1.04 2.00 100.0 RPL4-202 retained intron esophagus muscularis mucosa (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 45.00 0.31 0.18 100.0 ENST00000563103 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3338.00 52.38 13.59 100.0 RPL4-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 637.00 10.00 2.59 100.0 RPL4-207 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 28646.00 84.38 116.61 97.12 ENST00000565336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 2589.00 7.63 10.54 67.88 ENST00000565336 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3432.00 0.30 13.97 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 1129.00 0.10 4.60 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3000.00 0.26 12.21 100.0 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 755577.00 65.20 3075.69 66.17 RBMX-210 retained intron esophagus muscularis mucosa (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 112.00 6.08 0.46 100.0 RPL4-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1071.00 58.17 4.36 100.0 RPL4-214 retained intron esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 222.00 1.85 0.90 100.0 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 2717.62 22.59 11.06 36.06 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 5833.21 48.48 23.74 78.18 POLG-DT-202 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 415.00 25.57 1.69 100.0 ENST00000570843 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 2611.00 72.41 10.63 100.0 MIR497HG-207 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 29425.00 95.82 119.78 97.61 MIR22HG-212 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 302.00 0.97 1.23 35.66 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 28860.00 92.34 117.48 96.01 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 545.00 1.74 2.22 64.34 SNORD53B-201 snoRNA esophagus muscularis mucosa (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 57.00 67.86 0.23 100.0 ENST00000578036 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 634.00 84.53 2.58 100.0 RPL23A-207 protein coding esophagus muscularis mucosa (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 1127.00 94.15 4.59 100.0 MIR744-201 miRNA esophagus muscularis mucosa (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 268.00 62.91 1.09 100.0 MIR378C-201 miRNA esophagus muscularis mucosa (Tissue)