ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 982.00 14.37 4.00 100.0 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 2311.00 33.82 9.41 64.45 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 3757.00 24.82 15.29 50.91 RN7SL2-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 113.00 0.75 0.46 100.0 RN7SL2-201 misc RNA esophagus muscularis mucosa (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 459.00 91.80 1.87 100.0 RGS11-208 retained intron esophagus muscularis mucosa (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 7569.00 4.71 30.81 93.0 NOP56-217 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 119384.00 74.30 485.97 79.69 NOP56-217 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 665.00 0.12 2.71 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 495315.00 87.38 2016.25 92.91 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 12182.00 2.15 49.59 83.42 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 1040.00 0.18 4.23 58.3 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 744.00 0.13 3.03 41.7 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 3807.00 0.67 15.50 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2751.00 0.49 11.20 100.0 RABGGTB-213 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 669.00 17.41 2.72 100.0 GNL3-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2897.00 75.40 11.79 100.0 GNL3-211 retained intron esophagus muscularis mucosa (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 2385.00 70.37 9.71 100.0 RPL5-205 retained intron esophagus muscularis mucosa (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 231.00 6.82 0.94 100.0 RPL5-205 retained intron esophagus muscularis mucosa (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 35.00 0.61 0.14 100.0 ZBED9-AS1-201 lncRNA esophagus muscularis mucosa (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2498.00 92.14 10.17 100.0 RPS3A-206 retained intron esophagus muscularis mucosa (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 16341.00 97.93 66.52 100.0 COX7C-203 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 7498.27 12.39 30.52 34.76 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 20653.13 34.13 84.07 74.0 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 24867.00 41.09 101.22 99.92 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 3021.00 4.99 12.30 100.0 RACK1-229 protein coding esophagus muscularis mucosa (Tissue)