ENCFF657CXK

Library Details

Organism: Homo Sapiens
Biosample: esophagus muscularis mucosa (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR383PLJ
Description: Part of ENCODE experiment ENCSR383PLJ. The libraries contained in this Experiment come from tissue sub-sections of a53 year old female's muscle layer of esophagus tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 511.00 0.14 2.08 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 184035.00 51.47 749.14 96.7 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2864.00 0.80 11.66 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 9826.00 2.75 40.00 43.55 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 10684.00 2.99 43.49 64.68 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 220.00 0.06 0.90 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 22.00 0.01 0.09 100.0 EIF4A2-219 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 15021.00 98.58 61.15 100.0 RPS8-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 243.00 35.22 0.99 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 182.00 26.38 0.74 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 39.00 5.65 0.16 100.0 RPL7A-206 protein coding CDS not defined esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 4661.00 0.55 18.97 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 531.00 0.06 2.16 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 1.00 0.00 0.00 100.0 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 376476.00 44.65 1532.50 99.57 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 455366.00 54.01 1853.63 96.93 RPL21-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 30.00 34.48 0.12 100.0 GABRE-209 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 16724.00 21.45 68.08 75.05 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 114.00 0.15 0.46 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 50062.00 64.20 203.78 99.66 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 78.00 0.10 0.32 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 93.00 0.12 0.38 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 220.00 0.28 0.90 80.88 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 60.00 0.08 0.24 100.0 RPL13A-212 retained intron esophagus muscularis mucosa (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 982.00 14.37 4.00 100.0 RPL7A-207 protein coding CDS not defined esophagus muscularis mucosa (Tissue)