ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 522.00 1.92 1.90 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 15.09 0.06 0.05 3.71 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 10372.00 38.20 37.73 99.93 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 34.00 0.13 0.12 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2368.00 8.72 8.61 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 745.00 2.74 2.71 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 1586.00 0.50 5.77 69.74 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 287451.00 91.17 1045.57 99.25 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 849.00 0.27 3.09 36.08 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 19451.00 6.17 70.75 96.46 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 278.00 35.64 1.01 100.0 FMN2-209 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 6.00 0.18 0.02 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 25.00 0.75 0.09 20.66 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 146.00 4.36 0.53 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 367.00 10.97 1.33 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 495.00 14.80 1.80 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 96.00 2.87 0.35 79.34 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 2.00 66.67 0.01 100.0 MIR124-1HG-216 lncRNA sigmoid colon (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 150.00 19.35 0.55 100.0 SNHG10-212 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 5133.00 71.56 18.67 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1160.00 16.17 4.22 77.54 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 10.00 0.14 0.04 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 69.00 38.76 0.25 100.0 RPSA-216 retained intron sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 1684.00 5.46 6.13 81.95 MIR99AHG-370 lncRNA sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 27879.00 90.46 101.41 97.92 MIR99AHG-370 lncRNA sigmoid colon (Tissue)