ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 8935.00 0.59 32.50 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 78245.00 5.13 284.61 99.7 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 1343.00 0.09 4.89 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 90.00 0.01 0.33 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 835.00 0.05 3.04 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 1007.00 0.07 3.66 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 519.00 0.03 1.89 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 8004.00 0.52 29.11 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 266.00 0.02 0.97 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 988.00 0.06 3.59 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 85211.00 5.59 309.95 78.98 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 11.00 0.00 0.04 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 6320.00 0.41 22.99 88.33 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 51.00 0.00 0.19 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 38.00 0.00 0.14 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 45648.00 2.99 166.04 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 1821.00 0.12 6.62 78.46 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1542.03 0.10 5.61 37.94 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 543.00 0.04 1.98 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 1983.00 0.13 7.21 60.02 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 673.00 0.04 2.45 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 406.00 0.03 1.48 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 4319.00 15.91 15.71 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 360.17 1.33 1.31 88.49 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 110.00 0.41 0.40 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)