ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 1.00 0.56 0.00 100.0 ENST00000582320 lncRNA sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1896.00 7.11 6.90 100.0 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 10917.48 40.95 39.71 51.96 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 11855.97 44.47 43.12 51.11 RPL17-214 retained intron sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 4.00 0.00 0.01 100.0 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 479515.00 99.21 1744.18 99.88 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 49.00 0.01 0.18 100.0 SNORD43-201 snoRNA sigmoid colon (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 59.00 26.34 0.21 100.0 MIR151B-201 miRNA sigmoid colon (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 26.00 1.07 0.09 100.0 SNORD3A-201 snoRNA sigmoid colon (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1876.00 33.91 6.82 100.0 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2876.00 51.98 10.46 85.95 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2558.00 33.88 9.30 96.82 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1548.00 20.50 5.63 84.91 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1403.00 18.58 5.10 89.31 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 963.00 12.75 3.50 82.31 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 491.00 52.46 1.79 100.0 ODAD3-204 nonsense mediated decay sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 606.00 2.72 2.20 100.0 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 114.00 0.51 0.41 100.0 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 11537.00 51.74 41.96 58.81 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 327.00 25.27 1.19 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 85.00 6.57 0.31 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 4739889.00 73.43 17240.80 74.8 CARMN-209 lncRNA sigmoid colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 274.00 62.70 1.00 100.0 PPFIA1P1-201 processed pseudogene sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 1467.00 41.71 5.34 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 1537.00 43.70 5.59 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)