ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 5507.00 97.71 20.03 100.0 MIR98-201 miRNA sigmoid colon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 614.00 90.96 2.23 100.0 SNORD113-5-201 snoRNA sigmoid colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 104.00 89.66 0.38 100.0 MIR15A-201 miRNA sigmoid colon (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 1.00 100.00 0.00 100.0 MIR376C-201 miRNA sigmoid colon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 250.00 54.00 0.91 100.0 SNHG21-206 retained intron sigmoid colon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 82488.00 48.61 300.04 97.83 MIR486-1-201 miRNA sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 27413.00 71.07 99.71 99.99 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 311.00 0.81 1.13 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 636.00 1.65 2.31 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 3850.00 9.98 14.00 49.09 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 17580.50 35.50 63.95 44.74 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 16.00 0.03 0.06 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 821.00 1.66 2.99 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 13.00 0.03 0.05 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 22598.17 45.64 82.20 57.5 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 526.00 7.14 1.91 100.0 U2.3-201 snRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 19.00 0.26 0.07 63.33 U2.3-201 snRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 5.00 0.07 0.02 100.0 U2.3-201 snRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 716.00 9.72 2.60 100.0 U2.3-201 snRNA sigmoid colon (Tissue)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 155.00 2.10 0.56 100.0 U2.3-201 snRNA sigmoid colon (Tissue)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1177.00 16.15 4.28 100.0 U2.6-201 snRNA sigmoid colon (Tissue)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 75.00 0.24 0.27 19.38 ENST00000619323 lncRNA sigmoid colon (Tissue)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 29841.00 96.93 108.54 98.3 ENST00000619323 lncRNA sigmoid colon (Tissue)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 166.00 23.55 0.60 100.0 SCARNA4-202 scaRNA sigmoid colon (Tissue)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 1373.00 84.81 4.99 100.0 ENST00000625572 miRNA sigmoid colon (Tissue)