ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 1557.00 5.75 5.66 100.0 POLG-DT-202 lncRNA sigmoid colon (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 375.00 27.61 1.36 100.0 ENST00000570843 lncRNA sigmoid colon (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 3386.00 73.40 12.32 100.0 MIR497HG-207 lncRNA sigmoid colon (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 20345.00 97.31 74.00 97.85 MIR22HG-212 lncRNA sigmoid colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 384.00 46.38 1.40 52.67 SNORD53B-201 snoRNA sigmoid colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 7.00 0.85 0.03 100.0 SNORD53B-201 snoRNA sigmoid colon (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 345.00 41.67 1.25 47.33 SNORD53B-201 snoRNA sigmoid colon (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 108.00 65.85 0.39 100.0 ENST00000578036 lncRNA sigmoid colon (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 985.00 87.63 3.58 100.0 RPL23A-207 protein coding sigmoid colon (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 405.00 95.07 1.47 100.0 MIR744-201 miRNA sigmoid colon (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 347.00 57.74 1.26 100.0 MIR378C-201 miRNA sigmoid colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 218.00 61.24 0.79 66.26 MIR142HG-201 lncRNA sigmoid colon (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 1.00 0.28 0.00 0.65 MIR142HG-201 lncRNA sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 1996.11 0.18 7.26 50.43 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 2097.26 0.19 7.63 59.5 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 901195.00 79.57 3277.99 88.78 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 222242.00 19.62 808.38 91.73 RPL23A-208 retained intron sigmoid colon (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 86.00 2.06 0.31 100.0 MIR133A1HG-202 lncRNA sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 12050.00 6.18 43.83 54.95 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 32070.00 16.45 116.65 69.3 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 1159.00 0.59 4.22 100.0 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 80630.00 41.35 293.28 93.59 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 64994.00 33.33 236.41 95.67 RPL17-211 retained intron sigmoid colon (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 43.00 24.02 0.16 28.67 ENST00000582320 lncRNA sigmoid colon (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 5.00 2.79 0.02 100.0 ENST00000582320 lncRNA sigmoid colon (Tissue)