ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 42499.00 97.69 154.59 100.0 TAF1D-215 retained intron sigmoid colon (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 935753.00 70.82 3403.69 72.42 ENST00000548801 lncRNA sigmoid colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 728.00 19.61 2.65 100.0 ENST00000554988 lncRNA sigmoid colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 459.00 12.37 1.67 100.0 ENST00000554988 lncRNA sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 844.00 2.19 3.07 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 35540.00 92.18 129.27 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 393.00 1.02 1.43 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 158.00 0.41 0.57 100.0 SNHG14-220 retained intron sigmoid colon (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2303.00 99.52 8.38 100.0 TEKT4P2-201 transcribed unprocessed pseudogene sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 92805.00 95.27 337.57 98.24 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 607.00 0.62 2.21 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 420.00 0.43 1.53 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 63.00 0.06 0.23 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 2.00 0.00 0.01 100.0 RPL4-202 retained intron sigmoid colon (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 393.00 1.80 1.43 100.0 ENST00000563103 lncRNA sigmoid colon (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 279.00 4.81 1.01 100.0 RPL4-207 retained intron sigmoid colon (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 4266.00 73.53 15.52 100.0 RPL4-207 retained intron sigmoid colon (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 3151.00 7.89 11.46 73.85 ENST00000565336 lncRNA sigmoid colon (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 33891.00 84.82 123.27 97.38 ENST00000565336 lncRNA sigmoid colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3791.00 27.53 13.79 100.0 RBMX-210 retained intron sigmoid colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3911.00 28.40 14.23 100.0 RBMX-210 retained intron sigmoid colon (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 69.00 0.50 0.25 7.21 RBMX-210 retained intron sigmoid colon (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 88.00 28.03 0.32 100.0 RPL4-214 retained intron sigmoid colon (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 13580.21 50.12 49.40 79.07 POLG-DT-202 lncRNA sigmoid colon (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 7815.08 28.85 28.43 43.72 POLG-DT-202 lncRNA sigmoid colon (Tissue)