ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 108.00 3.17 0.39 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 649.00 19.03 2.36 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 156.00 4.57 0.57 100.0 RPL13A-212 retained intron sigmoid colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 125.00 7.96 0.45 100.0 RPL7A-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 465.00 29.60 1.69 100.0 RPL7A-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 278.00 87.97 1.01 100.0 RGS11-208 retained intron sigmoid colon (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 7.00 0.05 0.03 14.89 NOP56-217 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 9346.00 71.53 33.99 87.52 NOP56-217 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 39937.00 69.27 145.27 87.52 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 822.00 1.43 2.99 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 493.00 0.86 1.79 45.86 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 582.00 1.01 2.12 54.14 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1525.00 2.65 5.55 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2655.00 4.61 9.66 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 5467.00 81.51 19.89 100.0 GNL3-211 retained intron sigmoid colon (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 858.00 12.79 3.12 100.0 GNL3-211 retained intron sigmoid colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 184.00 38.41 0.67 100.0 RPL5-205 retained intron sigmoid colon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 36.00 1.25 0.13 100.0 ZBED9-AS1-201 lncRNA sigmoid colon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 3717.00 91.71 13.52 100.0 RPS3A-206 retained intron sigmoid colon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 20766.00 98.23 75.53 100.0 COX7C-203 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 7656.40 21.82 27.85 48.62 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 11823.68 33.70 43.01 61.02 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 9710.00 27.67 35.32 99.27 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 2484.00 7.08 9.04 100.0 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 3.00 0.19 0.01 11.54 RACK1-230 retained intron sigmoid colon (Tissue)