ENCFF655CDV

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR635SLB
Description: Part of ENCODE experiment ENCSR635SLB. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 2948.00 14.37 10.72 99.73 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 8077.00 39.37 29.38 100.0 RPL13-207 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 2357.00 0.63 8.57 54.48 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 183.00 0.05 0.67 27.19 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 7.00 0.00 0.03 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1122.00 0.30 4.08 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 121.00 0.03 0.44 100.0 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 207.00 0.06 0.75 19.9 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4515.00 1.20 16.42 82.74 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 58105.00 15.50 211.35 81.36 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 8540.00 2.28 31.06 68.89 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 278131.00 74.21 1011.67 97.59 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 1346.00 0.36 4.90 52.54 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1015.00 0.27 3.69 55.37 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 1685.00 0.45 6.13 71.92 EIF4A2-219 retained intron sigmoid colon (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 6.00 4.23 0.02 100.0 RPS8-207 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 335.00 34.08 1.22 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 288.00 29.30 1.05 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 44.00 4.48 0.16 100.0 RPL7A-206 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 647244.00 93.91 2354.28 97.02 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 6.00 0.00 0.02 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 6584.00 0.96 23.95 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1041.00 0.15 3.79 100.0 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 31049.00 4.50 112.94 95.8 RPL21-209 retained intron sigmoid colon (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 39.00 47.56 0.14 100.0 GABRE-209 retained intron sigmoid colon (Tissue)