ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 599.00 0.39 3.15 100.0 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 20.00 0.01 0.11 100.0 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 2120.00 1.37 11.16 78.99 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 137044.00 88.48 721.36 100.0 SNHG32-223 lncRNA transverse colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 13559.00 92.07 71.37 98.98 SNHG32-227 lncRNA transverse colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 467.00 3.17 2.46 100.0 SNHG32-227 lncRNA transverse colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 35.00 0.24 0.18 100.0 SNHG32-227 lncRNA transverse colon (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 12.00 0.08 0.06 100.0 SNHG32-227 lncRNA transverse colon (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 798.00 80.44 4.20 100.0 B4GALT1-203 nonsense mediated decay transverse colon (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 414.00 3.17 2.18 100.0 ENST00000722183 lncRNA transverse colon (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 2472.00 18.93 13.01 78.08 ENST00000722183 lncRNA transverse colon (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 169.00 1.29 0.89 100.0 ENST00000722183 lncRNA transverse colon (Tissue)
ENST00000726427.1 ENST00000726427.1_819_841_+ 819–841 8.00 42.11 0.04 100.0 MIR34BHG-202 lncRNA transverse colon (Tissue)
ENST00000730292.1 ENST00000730292.1_241_262_+ 241–262 2608.00 80.47 13.73 85.85 THBS3-AS1-228 lncRNA transverse colon (Tissue)
ENST00000732834.1 ENST00000732834.1_2132_2152_+ 2132–2152 1083.00 45.95 5.70 100.0 MIR200CHG-202 lncRNA transverse colon (Tissue)
ENST00000732834.1 ENST00000732834.1_1719_1741_+ 1719–1741 476.00 20.20 2.51 100.0 MIR200CHG-202 lncRNA transverse colon (Tissue)
ENST00000738116.1 ENST00000738116.1_64_138_+ 64–138 1112.00 31.39 5.85 100.0 SNHG16-266 lncRNA transverse colon (Tissue)
ENST00000738116.1 ENST00000738116.1_111_138_+ 111–138 607.00 17.14 3.20 100.0 SNHG16-266 lncRNA transverse colon (Tissue)
ENST00000738116.1 ENST00000738116.1_64_97_+ 64–97 64.00 1.81 0.34 100.0 SNHG16-266 lncRNA transverse colon (Tissue)
ENST00000738116.1 ENST00000738116.1_88_138_+ 88–138 186.00 5.25 0.98 100.0 SNHG16-266 lncRNA transverse colon (Tissue)
ENST00000741826.1 ENST00000741826.1_184_205_+ 184–205 21.00 70.00 0.11 100.0 MEG8-261 lncRNA transverse colon (Tissue)
ENST00000743202.1 ENST00000743202.1_560_577_+ 560–577 170.00 52.63 0.89 100.0 NR2F2-AS1-327 lncRNA transverse colon (Tissue)
ENST00000747675.1 ENST00000747675.1_802_853_+ 802–853 76.00 0.73 0.40 32.76 ENST00000747675 lncRNA transverse colon (Tissue)
ENST00000747675.1 ENST00000747675.1_817_853_+ 817–853 5038.00 48.35 26.52 100.0 ENST00000747675 lncRNA transverse colon (Tissue)
ENST00000747675.1 ENST00000747675.1_800_853_+ 800–853 74.00 0.71 0.39 49.33 ENST00000747675 lncRNA transverse colon (Tissue)