ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 662.00 32.25 3.48 100.0 SNHG10-212 lncRNA transverse colon (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 13123.08 58.86 69.08 61.44 SNHG19-202 lncRNA transverse colon (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 8344.37 37.43 43.92 52.71 SNHG19-202 lncRNA transverse colon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2328.00 63.06 12.25 100.0 MIR222HG-206 lncRNA transverse colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 720.00 19.50 3.79 75.16 MIR222HG-206 lncRNA transverse colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 10.00 0.27 0.05 100.0 MIR222HG-206 lncRNA transverse colon (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 1029.00 71.01 5.42 100.0 RPSA-216 retained intron transverse colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 657.00 3.58 3.46 78.12 MIR99AHG-370 lncRNA transverse colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 16921.00 92.21 89.07 98.49 MIR99AHG-370 lncRNA transverse colon (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 285.00 97.27 1.50 100.0 HPS4-237 retained intron transverse colon (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 46.00 88.46 0.24 100.0 MEG8-253 lncRNA transverse colon (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 8.00 2.60 0.04 100.0 MEG9-206 lncRNA transverse colon (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 13.00 4.22 0.07 100.0 MEG9-206 lncRNA transverse colon (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 110.00 35.71 0.58 100.0 MEG9-206 lncRNA transverse colon (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 345.00 10.84 1.82 100.0 DNAJC5-203 nonsense mediated decay transverse colon (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 2276.00 36.11 11.98 100.0 ENST00000707189 TEC transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 106.00 0.25 0.56 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 20089.63 46.64 105.75 51.37 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 41.00 0.10 0.22 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 21438.89 49.78 112.85 55.49 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 665.00 1.54 3.50 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 47.00 0.11 0.25 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 43.00 0.10 0.23 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 78.00 0.18 0.41 100.0 MIR17HG-214 lncRNA transverse colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 13037.00 8.42 68.62 100.0 SNHG32-223 lncRNA transverse colon (Tissue)