ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 2925.00 1.93 15.40 84.88 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 2114.00 1.39 11.13 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 662.00 0.44 3.48 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 247.00 0.16 1.30 92.86 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 2548.00 1.68 13.41 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 92.00 0.06 0.48 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2151.00 1.42 11.32 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 18821.00 12.40 99.07 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 20.00 0.01 0.11 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 61.00 14.91 0.32 100.0 FTX-219 lncRNA transverse colon (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 253.00 61.86 1.33 95.11 FTX-219 lncRNA transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 52.00 0.44 0.27 41.94 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 52.00 0.44 0.27 50.49 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 6524.00 54.66 34.34 89.68 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 72.00 0.60 0.38 58.06 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1765.00 14.79 9.29 61.54 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 332.00 2.78 1.75 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 733.00 6.14 3.86 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 112.00 0.94 0.59 100.0 CTC1-214 protein coding transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 398.00 1.84 2.09 71.07 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 2350.00 10.89 12.37 91.3 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 2.00 0.01 0.01 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 689.00 3.19 3.63 65.68 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 39.00 0.18 0.21 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 19.00 0.09 0.10 100.0 ENST00000651540 lncRNA transverse colon (Tissue)