ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 207.00 0.96 1.09 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 50.00 0.23 0.26 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 52.00 0.24 0.27 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 1978.00 9.17 10.41 32.39 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 61.00 0.28 0.32 100.0 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 12216.00 56.61 64.30 91.43 ENST00000651540 lncRNA transverse colon (Tissue)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 3301.00 1.71 17.38 100.0 MIRLET7A1HG-203 lncRNA transverse colon (Tissue)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 534.00 90.97 2.81 100.0 MEG8-225 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 74056.00 93.42 389.81 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 140.00 0.18 0.74 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 186.00 0.23 0.98 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 29.00 0.04 0.15 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 1119.00 1.41 5.89 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 2891.00 3.65 15.22 100.0 SNHG29-232 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3153_+ 3091–3153 40.00 0.64 0.21 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 2690.00 42.79 14.16 94.29 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_80_95_+ 80–95 146.00 2.32 0.77 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_682_775_+ 682–775 77.00 1.22 0.41 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 685.00 10.90 3.61 100.0 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655143.1 ENST00000655143.1_2_94_+ 2–94 322.00 5.12 1.69 94.71 SNHG14-234 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 101.00 2.00 0.53 15.98 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 181.00 3.58 0.95 100.0 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 959.00 18.96 5.05 85.62 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 111.00 2.19 0.58 100.0 ENST00000655317 lncRNA transverse colon (Tissue)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 2477.00 1.32 13.04 91.74 LINC01962-202 lncRNA transverse colon (Tissue)