ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 75.00 1.46 0.39 72.82 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 53.00 1.03 0.28 100.0 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 313.00 6.09 1.65 53.6 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 185.00 3.60 0.97 72.27 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 165.00 3.21 0.87 63.22 SNHG14-224 lncRNA transverse colon (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 5115.65 5.25 26.93 54.02 5S_rRNA.20-201 rRNA pseudogene transverse colon (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 936.00 10.29 4.93 100.0 HSPA9-211 retained intron transverse colon (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 4845.00 53.25 25.50 75.67 HSPA9-211 retained intron transverse colon (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 4182.00 45.78 22.01 100.0 DNM3OS-205 lncRNA transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 618.00 0.41 3.25 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 435.00 0.29 2.29 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 52.00 0.03 0.27 92.86 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1799.00 1.19 9.47 95.79 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 63.00 0.04 0.33 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 1003.00 0.66 5.28 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 53.00 0.03 0.28 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 99489.00 65.56 523.68 99.93 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 611.00 0.40 3.22 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 5004.00 3.30 26.34 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 367.00 0.24 1.93 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 168.00 0.11 0.88 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 4695.00 3.09 24.71 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 84.00 0.06 0.44 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 597.00 0.39 3.14 100.0 GAS5-230 retained intron transverse colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1366.00 0.90 7.19 100.0 GAS5-230 retained intron transverse colon (Tissue)