ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 14784.00 18.14 77.82 57.18 RACK1-230 retained intron transverse colon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 64195.00 78.78 337.90 94.69 RACK1-230 retained intron transverse colon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 73.00 2.67 0.38 100.0 RNA5SP486-201 rRNA pseudogene transverse colon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 4796.00 89.70 25.24 100.0 SCARNA5-201 scaRNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 436.00 0.35 2.29 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 59619.00 47.27 313.82 98.67 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 4933.00 3.91 25.97 85.99 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 217.00 0.17 1.14 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 349.00 0.28 1.84 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 271.00 0.21 1.43 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 34118.00 27.05 179.59 99.66 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 228.00 0.18 1.20 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 549.00 0.44 2.89 73.4 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 396.00 0.31 2.08 82.33 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 3128.00 2.48 16.46 100.0 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 4570.00 3.62 24.06 42.93 RNY4-201 misc RNA transverse colon (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 2439.00 76.60 12.84 83.56 MIR3142HG-201 lncRNA transverse colon (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 198.00 68.75 1.04 100.0 SNHG6-204 retained intron transverse colon (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 4066.00 14.90 21.40 100.0 MIR151A-201 miRNA transverse colon (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 19753.00 72.40 103.97 87.41 MIR151A-201 miRNA transverse colon (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 8666.00 99.48 45.62 100.0 DENND3-221 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 82.00 0.78 0.43 100.0 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 168.00 1.59 0.88 68.85 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 82.00 0.78 0.43 65.08 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 76.00 0.72 0.40 31.15 WDR74-204 protein coding transverse colon (Tissue)