ENCFF645FQS

Library Details

Organism: Homo Sapiens
Biosample: transverse colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR525WFB
Description: Part of ENCODE experiment ENCSR525WFB. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's transverse colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 1372.00 13.00 7.22 78.4 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 82.00 0.78 0.43 100.0 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 207.00 1.96 1.09 100.0 WDR74-204 protein coding transverse colon (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 272.00 2.58 1.43 100.0 WDR74-204 protein coding transverse colon (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 459.00 67.90 2.42 100.0 HSPA8-211 retained intron transverse colon (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 88.00 27.33 0.46 100.0 SCARNA9-201 lncRNA transverse colon (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 37606.00 96.20 197.95 100.0 TAF1D-215 retained intron transverse colon (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 93.00 0.24 0.49 100.0 TAF1D-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 20.00 2.23 0.11 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 660.00 73.58 3.47 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 3.00 0.33 0.02 100.0 HSPA8-215 retained intron transverse colon (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 83.00 11.87 0.44 100.0 RPS2-215 retained intron transverse colon (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 602965.00 76.39 3173.82 77.96 ENST00000548801 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 653.00 7.17 3.44 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 4126.00 45.32 21.72 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 256.00 2.81 1.35 100.0 ENST00000554988 lncRNA transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 10331.00 83.67 54.38 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 824.00 6.67 4.34 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 320.00 2.59 1.68 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 193.00 1.56 1.02 100.0 SNHG14-220 retained intron transverse colon (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 789.00 98.87 4.15 100.0 TEKT4P2-201 transcribed unprocessed pseudogene transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 14.00 0.11 0.07 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 70.00 0.54 0.37 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 614.00 4.76 3.23 100.0 RPL4-202 retained intron transverse colon (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 8793.00 68.19 46.28 93.51 RPL4-202 retained intron transverse colon (Tissue)