ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 16696.00 43.88 123.51 99.97 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 53.00 0.14 0.39 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 4275.00 11.23 31.62 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 1619.00 4.25 11.98 100.0 SNHG5-273 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 200.00 1.10 1.48 66.45 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 17092.00 93.93 126.44 98.77 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 118.00 0.65 0.87 38.56 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 208.00 1.14 1.54 83.53 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 6.00 0.03 0.04 100.0 MEG8-251 lncRNA upper lobe of left lung (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 245.00 33.79 1.81 100.0 FMN2-209 protein coding CDS not defined upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 8.00 0.08 0.06 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 94.00 0.91 0.70 19.22 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 579.00 5.59 4.28 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 1811.00 17.47 13.40 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 1812.00 17.48 13.40 100.0 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 395.00 3.81 2.92 80.78 LINC02739-203 lncRNA upper lobe of left lung (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 744.00 27.30 5.50 100.0 SNHG10-212 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 10390.00 63.47 76.86 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 2812.00 17.18 20.80 66.46 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 94.00 0.57 0.70 100.0 MIR222HG-206 lncRNA upper lobe of left lung (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 857.00 66.74 6.34 100.0 RPSA-216 retained intron upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2664.00 12.66 19.71 89.58 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 16795.00 79.84 124.24 96.95 MIR99AHG-370 lncRNA upper lobe of left lung (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 259.00 93.50 1.92 100.0 HPS4-237 retained intron upper lobe of left lung (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 10.00 71.43 0.07 100.0 MEG8-253 lncRNA upper lobe of left lung (Tissue)