ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 4872.00 1.08 36.04 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1370.00 0.30 10.13 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 398.00 0.09 2.94 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 5682.00 1.26 42.03 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 18.00 0.00 0.13 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 846.00 0.19 6.26 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1934.00 0.43 14.31 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 12812.00 2.83 94.78 86.11 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 8670.00 1.92 64.14 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 40.00 0.01 0.30 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 349.00 0.08 2.58 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 4058.00 0.90 30.02 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 136367.00 30.14 1008.76 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 90.00 18.00 0.67 100.0 FTX-219 lncRNA upper lobe of left lung (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 285.00 57.00 2.11 95.32 FTX-219 lncRNA upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 545.00 4.03 4.03 83.85 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 199.00 1.47 1.47 81.56 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 6781.00 50.14 50.16 86.58 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 105.00 0.78 0.78 16.15 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 2350.00 17.38 17.38 60.82 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 353.00 2.61 2.61 100.0 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 462.00 3.42 3.42 100.0 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 109.00 0.81 0.81 100.0 CTC1-214 protein coding upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1521.00 2.09 11.25 74.27 ENST00000651540 lncRNA upper lobe of left lung (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 3252.00 4.47 24.06 88.73 ENST00000651540 lncRNA upper lobe of left lung (Tissue)