ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 194.00 41.28 1.44 100.0 DMRT2-209 protein coding upper lobe of left lung (Tissue)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 93.00 19.79 0.69 100.0 DMRT2-209 protein coding upper lobe of left lung (Tissue)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1508.00 61.58 11.16 100.0 SNORD98-201 snoRNA upper lobe of left lung (Tissue)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 365.00 14.90 2.70 100.0 SNORD98-201 snoRNA upper lobe of left lung (Tissue)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 73852.59 68.21 546.32 72.88 MIR106AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 10.39 0.01 0.08 21.64 MIR106AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 2.00 0.00 0.01 100.0 MIR106AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 33.23 0.03 0.25 69.22 MIR106AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 52.00 55.32 0.38 100.0 MEG8-222 lncRNA upper lobe of left lung (Tissue)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 20.00 21.28 0.15 100.0 MEG8-222 lncRNA upper lobe of left lung (Tissue)
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 163.00 4.32 1.21 100.0 SNHG14-224 lncRNA upper lobe of left lung (Tissue)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 645.00 17.08 4.77 76.33 SNHG14-224 lncRNA upper lobe of left lung (Tissue)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 559.00 14.80 4.14 71.21 SNHG14-224 lncRNA upper lobe of left lung (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 4158.41 5.72 30.76 44.55 5S_rRNA.20-201 rRNA pseudogene upper lobe of left lung (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 281.00 6.41 2.08 100.0 HSPA9-211 retained intron upper lobe of left lung (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 1568.00 35.76 11.60 59.51 HSPA9-211 retained intron upper lobe of left lung (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 2895.00 70.90 21.42 100.0 DNM3OS-205 lncRNA upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 4119.00 0.91 30.47 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 371.00 0.08 2.74 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 4346.00 0.96 32.15 91.67 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 55.00 0.01 0.41 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 413.00 0.09 3.06 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 172.00 0.04 1.27 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 249044.00 55.05 1842.28 99.83 GAS5-230 retained intron upper lobe of left lung (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 674.00 0.15 4.99 100.0 GAS5-230 retained intron upper lobe of left lung (Tissue)