ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 2640.00 81.46 19.53 100.0 MIR497HG-207 lncRNA upper lobe of left lung (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 31925.00 96.46 236.16 97.37 MIR22HG-212 lncRNA upper lobe of left lung (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 480.00 49.59 3.55 60.0 SNORD53B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 320.00 33.06 2.37 40.0 SNORD53B-201 snoRNA upper lobe of left lung (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 65.00 32.34 0.48 100.0 ENST00000578036 lncRNA upper lobe of left lung (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 714.00 84.70 5.28 100.0 RPL23A-207 protein coding upper lobe of left lung (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 368.00 90.42 2.72 100.0 MIR744-201 miRNA upper lobe of left lung (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 65.00 68.42 0.48 100.0 MIR378C-201 miRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 5661.00 75.44 41.88 84.56 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 8.00 0.11 0.06 100.0 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 232.00 3.09 1.72 10.56 MIR142HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 250.24 0.03 1.85 60.59 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 156.60 0.02 1.16 48.48 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 717661.00 78.77 5308.82 86.2 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 188973.00 20.74 1397.91 91.62 RPL23A-208 retained intron upper lobe of left lung (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 1.00 1.19 0.01 100.0 MIR133A1HG-202 lncRNA upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 2802.00 2.45 20.73 60.25 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 5930.00 5.18 43.87 31.57 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 988.00 0.86 7.31 100.0 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 89107.00 77.80 659.16 98.1 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 11467.00 10.01 84.83 95.6 RPL17-211 retained intron upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 1320.00 31.29 9.76 37.8 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 117.00 2.77 0.87 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 68.00 1.61 0.50 100.0 ENST00000582320 lncRNA upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 6672.00 19.41 49.36 100.0 RPL17-214 retained intron upper lobe of left lung (Tissue)