ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 872.00 22.88 6.45 100.0 ENST00000554988 lncRNA upper lobe of left lung (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 601.00 15.77 4.45 100.0 ENST00000554988 lncRNA upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 301.00 0.77 2.23 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 746.00 1.90 5.52 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 36698.00 93.64 271.47 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 26.00 0.07 0.19 100.0 SNHG14-220 retained intron upper lobe of left lung (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 1155.00 99.48 8.54 100.0 TEKT4P2-201 transcribed unprocessed pseudogene upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1225.00 2.12 9.06 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 48270.00 83.47 357.07 93.89 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 10.00 0.02 0.07 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 1241.00 2.15 9.18 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 1059.00 1.83 7.83 100.0 RPL4-202 retained intron upper lobe of left lung (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1224.00 2.00 9.05 100.0 ENST00000563103 lncRNA upper lobe of left lung (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 4955.00 51.44 36.65 100.0 RPL4-207 retained intron upper lobe of left lung (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 778.00 8.08 5.76 100.0 RPL4-207 retained intron upper lobe of left lung (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 3698.00 1.57 27.36 72.75 ENST00000565336 lncRNA upper lobe of left lung (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 223647.00 95.10 1654.40 98.51 ENST00000565336 lncRNA upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 89.00 0.44 0.66 14.66 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 5820.00 28.98 43.05 100.0 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 6430.00 32.02 47.57 100.0 RBMX-210 retained intron upper lobe of left lung (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 353.00 24.31 2.61 100.0 RPL4-214 retained intron upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 179.00 0.65 1.32 100.0 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 19074.54 69.30 141.10 84.95 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 3824.15 13.89 28.29 17.63 POLG-DT-202 lncRNA upper lobe of left lung (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1146.00 34.59 8.48 100.0 ENST00000570843 lncRNA upper lobe of left lung (Tissue)