ENCFF643IED

Library Details

Organism: Homo Sapiens
Biosample: upper lobe of left lung (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR737NPO
Description: Part of ENCODE experiment ENCSR737NPO. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's upper lobe of left lung tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 13406.24 39.01 99.17 54.1 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 12353.30 35.95 91.38 47.44 RPL17-214 retained intron upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 424020.00 98.78 3136.64 99.93 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 51.00 0.01 0.38 100.0 SNORD43-201 snoRNA upper lobe of left lung (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 109.00 36.82 0.81 100.0 MIR151B-201 miRNA upper lobe of left lung (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 10.00 0.31 0.07 100.0 SNORD3A-201 snoRNA upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 3231.00 30.01 23.90 100.0 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 4312.00 40.04 31.90 69.74 NSRP1-214 protein coding upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2785.00 25.92 20.60 94.92 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1685.00 15.68 12.46 85.1 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2870.00 26.71 21.23 92.88 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 998.00 9.29 7.38 70.43 MIR23AHG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 2.00 33.33 0.01 100.0 MIR122HG-201 lncRNA upper lobe of left lung (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 14.00 8.86 0.10 100.0 ODAD3-204 nonsense mediated decay upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 2335.00 5.24 17.27 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 142.00 0.32 1.05 100.0 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 29522.00 66.29 218.39 76.2 VMP1-217 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1064.00 36.23 7.87 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 141.00 4.80 1.04 100.0 C19orf48P-203 retained intron upper lobe of left lung (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1285430.00 83.19 9508.82 84.39 CARMN-209 lncRNA upper lobe of left lung (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 2096.00 57.14 15.50 100.0 PPFIA1P1-201 processed pseudogene upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 69.00 31.80 0.51 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 105.00 48.39 0.78 100.0 SNORD114-21-201 snoRNA upper lobe of left lung (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 5727.00 95.26 42.36 100.0 MIR98-201 miRNA upper lobe of left lung (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 4.00 19.05 0.03 100.0 SNORD113-5-201 snoRNA upper lobe of left lung (Tissue)