ENCFF631JZF

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR882DFF
Description: Part of ENCODE experiment ENCSR882DFF. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 345.00 27.49 1.61 100.0 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 740.00 58.96 3.45 88.41 NSRP1-214 protein coding sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 683.00 38.07 3.18 97.16 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 205.00 11.43 0.95 71.43 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 387.00 21.57 1.80 91.71 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 177.00 9.87 0.82 83.1 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 679.00 49.13 3.16 100.0 ODAD3-204 nonsense mediated decay sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 451.00 4.08 2.10 100.0 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 6.00 0.05 0.03 100.0 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 6450.00 58.36 30.04 66.58 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 22.00 11.89 0.10 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 11.00 5.95 0.05 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1758470.00 77.73 8190.14 78.83 CARMN-209 lncRNA sigmoid colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 195.00 55.08 0.91 100.0 PPFIA1P1-201 processed pseudogene sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 160.00 31.87 0.75 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 254.00 50.60 1.18 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 596.00 94.75 2.78 100.0 MIR98-201 miRNA sigmoid colon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 15.00 21.74 0.07 100.0 SNORD113-5-201 snoRNA sigmoid colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 15.00 100.00 0.07 100.0 MIR15A-201 miRNA sigmoid colon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 50.00 43.86 0.23 100.0 SNHG21-206 retained intron sigmoid colon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 17352.00 48.25 80.82 97.36 MIR486-1-201 miRNA sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 1203.00 55.75 5.60 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 32.00 1.48 0.15 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 66.00 3.06 0.31 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 255.00 11.82 1.19 50.3 NOP56-219 retained intron sigmoid colon (Tissue)