ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 248.00 4.43 1.45 75.15 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 2.00 33.33 0.01 100.0 MIR124-1HG-216 lncRNA sigmoid colon (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 146.00 18.48 0.86 100.0 SNHG10-212 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 2322.00 77.82 13.60 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 337.00 11.29 1.97 75.06 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 7.00 0.23 0.04 100.0 MIR222HG-206 lncRNA sigmoid colon (Tissue)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 30.00 20.98 0.18 100.0 RPSA-216 retained intron sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 2204.00 8.82 12.91 91.23 MIR99AHG-370 lncRNA sigmoid colon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 21669.00 86.72 126.92 98.15 MIR99AHG-370 lncRNA sigmoid colon (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 269.00 95.05 1.58 100.0 HPS4-237 retained intron sigmoid colon (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 21.00 91.30 0.12 100.0 MEG8-253 lncRNA sigmoid colon (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 3.00 1.74 0.02 100.0 MEG9-206 lncRNA sigmoid colon (Tissue)
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 69.00 40.12 0.40 100.0 MEG9-206 lncRNA sigmoid colon (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 751.00 13.26 4.40 100.0 DNAJC5-203 nonsense mediated decay sigmoid colon (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 611.00 17.14 3.58 100.0 ENST00000707189 TEC sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 27.00 0.04 0.16 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 20968.70 33.17 122.82 35.84 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 40804.53 64.54 239.01 66.65 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 385.00 0.61 2.26 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 82.00 0.13 0.48 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 33.00 0.05 0.19 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 110.00 0.17 0.64 100.0 MIR17HG-214 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 9248.00 5.01 54.17 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 817.00 0.44 4.79 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 11.00 0.01 0.06 100.0 SNHG32-223 lncRNA sigmoid colon (Tissue)