ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1153.81 0.17 6.76 43.62 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 552.00 0.08 3.23 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 805.00 0.12 4.72 60.07 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 593.00 0.09 3.47 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 193.00 0.03 1.13 100.0 SNHG1-248 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 3729.00 10.37 21.84 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 14000.90 38.92 82.01 91.06 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 285.00 0.79 1.67 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 243.00 0.68 1.42 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 99.04 0.28 0.58 0.64 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 8217.00 22.84 48.13 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 82.00 0.23 0.48 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 1554.00 4.32 9.10 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 255.00 0.71 1.49 100.0 SNHG5-273 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 543.00 0.42 3.18 62.41 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 122378.00 95.04 716.81 99.44 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 399.00 0.31 2.34 43.89 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 3505.00 2.72 20.53 95.09 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 13.00 0.01 0.08 100.0 MEG8-251 lncRNA sigmoid colon (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 424.00 50.06 2.48 100.0 FMN2-209 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 44.00 0.79 0.26 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 82.00 1.47 0.48 24.85 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 460.00 8.22 2.69 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 429.00 7.67 2.51 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 165.00 2.95 0.97 100.0 LINC02739-203 lncRNA sigmoid colon (Tissue)