ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 615.00 12.26 3.60 60.95 SNHG14-224 lncRNA sigmoid colon (Tissue)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 3310.07 5.19 19.39 49.81 5S_rRNA.20-201 rRNA pseudogene sigmoid colon (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 327.00 2.83 1.92 100.0 HSPA9-211 retained intron sigmoid colon (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 5641.00 48.84 33.04 63.44 HSPA9-211 retained intron sigmoid colon (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 6432.00 83.25 37.67 100.0 DNM3OS-205 lncRNA sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1618.00 0.38 9.48 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 314.00 0.07 1.84 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1660.00 0.39 9.72 93.79 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 9.00 0.00 0.05 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 21.00 0.00 0.12 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 489.00 0.12 2.86 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 282956.00 67.20 1657.37 99.85 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 386.00 0.09 2.26 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 934.00 0.22 5.47 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 265.00 0.06 1.55 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 197.00 0.05 1.15 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 1046.00 0.25 6.13 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 147.00 0.03 0.86 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 928.00 0.22 5.44 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 5134.00 1.22 30.07 81.11 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 3249.00 0.77 19.03 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 48.00 0.01 0.28 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 133.00 0.03 0.78 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 929.00 0.22 5.44 100.0 GAS5-230 retained intron sigmoid colon (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 113119.00 26.86 662.58 100.0 GAS5-230 retained intron sigmoid colon (Tissue)