ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 2280.00 20.97 13.35 81.49 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2134.00 19.63 12.50 94.01 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1010.00 9.29 5.92 78.78 MIR23AHG-201 lncRNA sigmoid colon (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 843.00 54.63 4.94 100.0 ODAD3-204 nonsense mediated decay sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 1005.00 2.91 5.89 100.0 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 84.00 0.24 0.49 100.0 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 19076.00 55.30 111.73 61.61 VMP1-217 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 302.00 30.66 1.77 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 26.00 2.64 0.15 100.0 C19orf48P-203 retained intron sigmoid colon (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 6967999.00 76.98 40813.87 78.14 CARMN-209 lncRNA sigmoid colon (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 594.00 51.16 3.48 100.0 PPFIA1P1-201 processed pseudogene sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 655.00 50.70 3.84 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 498.00 38.54 2.92 100.0 SNORD114-21-201 snoRNA sigmoid colon (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 4517.00 97.75 26.46 100.0 MIR98-201 miRNA sigmoid colon (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 517.00 91.99 3.03 100.0 SNORD113-5-201 snoRNA sigmoid colon (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 130.00 94.20 0.76 100.0 MIR15A-201 miRNA sigmoid colon (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 332.00 57.04 1.94 100.0 SNHG21-206 retained intron sigmoid colon (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 2278.00 46.73 13.34 95.23 MIR486-1-201 miRNA sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 10293.00 60.26 60.29 99.95 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 206.00 1.21 1.21 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 471.00 2.76 2.76 100.0 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 2151.00 12.59 12.60 46.69 NOP56-219 retained intron sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 8357.24 37.32 48.95 50.36 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 18.00 0.08 0.11 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 1107.00 4.94 6.48 100.0 RNA5-8SN2-201 rRNA sigmoid colon (Tissue)