ENCFF625OBY

Library Details

Organism: Homo Sapiens
Biosample: sigmoid colon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR880LXP
Description: Part of ENCODE experiment ENCSR880LXP. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's sigmoid colon tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1840.00 14.09 10.78 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 312.00 2.39 1.83 36.84 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 4922.00 37.69 28.83 86.55 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 376.00 2.88 2.20 100.0 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 535.00 4.10 3.13 63.16 RABGGTB-213 protein coding CDS not defined sigmoid colon (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 678.00 14.12 3.97 100.0 GNL3-211 retained intron sigmoid colon (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3866.00 80.51 22.64 100.0 GNL3-211 retained intron sigmoid colon (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 196.00 60.12 1.15 100.0 RPL5-205 retained intron sigmoid colon (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 43.00 0.77 0.25 100.0 ZBED9-AS1-201 lncRNA sigmoid colon (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 2774.00 91.46 16.25 100.0 RPS3A-206 retained intron sigmoid colon (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 19836.00 98.64 116.19 100.0 COX7C-203 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 1610.00 5.03 9.43 100.0 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 6490.66 20.29 38.02 43.83 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 12288.29 38.42 71.98 65.29 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 8826.00 27.60 51.70 99.41 RACK1-229 protein coding sigmoid colon (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 81.00 5.69 0.47 100.0 RACK1-230 retained intron sigmoid colon (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 173.00 2.26 1.01 100.0 RNA5SP486-201 rRNA pseudogene sigmoid colon (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 3246.00 89.99 19.01 100.0 SCARNA5-201 scaRNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 1340.00 0.61 7.85 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 3296.00 1.51 19.31 63.64 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 5864.00 2.69 34.35 86.34 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 937.00 0.43 5.49 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 16317.00 7.48 95.57 85.53 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 789.00 0.36 4.62 100.0 RNY4-201 misc RNA sigmoid colon (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 1573.00 0.72 9.21 80.96 RNY4-201 misc RNA sigmoid colon (Tissue)