ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 101.00 1.93 1.97 100.0 SNORD6-201 snoRNA GM23248 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 4773.00 91.14 93.28 100.0 SNORD6-201 snoRNA GM23248 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 3.00 0.23 0.06 100.0 RNY3-201 misc RNA GM23248 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 2836.00 53.70 55.43 99.58 SNORD82-201 snoRNA GM23248 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 75.00 1.42 1.47 100.0 SNORD82-201 snoRNA GM23248 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 176.00 3.33 3.44 100.0 SNORD82-201 snoRNA GM23248 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 202.00 3.83 3.95 80.16 SNORD82-201 snoRNA GM23248 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 626.33 11.86 12.24 58.92 SNORD82-201 snoRNA GM23248 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 495.24 9.38 9.68 46.59 SNORD82-201 snoRNA GM23248 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 199.00 3.77 3.89 100.0 SNORD82-201 snoRNA GM23248 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 3663.00 96.52 71.59 98.31 MIR146B-201 miRNA GM23248 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 3.00 33.33 0.06 100.0 SNHG20-201 lncRNA GM23248 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 17.00 28.33 0.33 100.0 ATP5MK-205 protein coding GM23248 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 7.00 11.67 0.14 100.0 ATP5MK-205 protein coding GM23248 (Cell line)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 27.00 40.30 0.53 100.0 LINC01556-201 lncRNA GM23248 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 37.00 62.71 0.72 100.0 ATAD3A-202 protein coding GM23248 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 35.00 57.38 0.68 76.09 TMC5-202 protein coding GM23248 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 34.00 94.44 0.66 100.0 ZMYM2-203 protein coding GM23248 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 8.00 3.10 0.16 100.0 RNVU1-7-201 snRNA GM23248 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 268.00 61.89 5.24 100.0 SNORD24-201 snoRNA GM23248 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 6.00 42.86 0.12 100.0 Y_RNA.389-201 misc RNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 480.00 4.96 9.38 88.4 SNORD101-201 snoRNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 8562.00 88.46 167.33 99.28 SNORD101-201 snoRNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 31.00 0.32 0.61 100.0 SNORD101-201 snoRNA GM23248 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 58.00 0.60 1.13 100.0 SNORD101-201 snoRNA GM23248 (Cell line)