ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 4.00 0.02 0.08 40.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 101.00 18.84 1.97 77.1 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 14.00 87.50 0.27 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 1.00 1.54 0.02 50.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 25.00 86.21 0.49 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 7.00 0.25 0.14 100.0 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 1832.00 64.44 35.80 89.5 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 90.16 11.76 1.76 22.32 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 44.00 5.74 0.86 56.41 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 345.69 45.07 6.76 84.94 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 1108.00 85.23 21.65 93.74 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 330.00 12.82 6.45 62.98 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 140.00 1.29 2.74 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 78.00 1.37 1.52 80.41 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 29.00 32.22 0.57 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 114.00 15.10 2.23 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 10756.00 86.75 210.21 97.94 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 2.00 0.14 0.04 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 118.00 8.17 2.31 54.38 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 28.00 44.44 0.55 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 7.00 10.00 0.14 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 15.00 2.89 0.29 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 3191.00 90.55 62.36 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 70.00 82.35 1.37 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA GM23248 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 2969.00 49.84 58.02 93.22 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA GM23248 (Cell line)