ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000771298.1 ENST00000771298.1_448_479_+ 448–479 3.00 0.26 0.06 100.0 ENST00000771298 lncRNA GM23248 (Cell line)
ENST00000771298.1 ENST00000771298.1_1591_1621_+ 1591–1621 637.00 55.20 12.45 90.74 ENST00000771298 lncRNA GM23248 (Cell line)
ENST00000771298.1 ENST00000771298.1_485_522_+ 485–522 16.00 1.39 0.31 100.0 ENST00000771298 lncRNA GM23248 (Cell line)
ENST00000773843.1 ENST00000773843.1_422_435_+ 422–435 23.00 36.51 0.45 100.0 ENST00000773843 lncRNA GM23248 (Cell line)
ENST00000775062.1 ENST00000775062.1_1327_1402_+ 1327–1402 1.00 0.00 0.02 100.0 SNHG12-223 lncRNA GM23248 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1392_+ 1328–1392 10139.00 38.70 198.15 94.58 SNHG12-223 lncRNA GM23248 (Cell line)
ENST00000775062.1 ENST00000775062.1_1328_1395_+ 1328–1395 15939.00 60.83 311.50 99.46 SNHG12-223 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_205_232_+ 205–232 654.00 1.76 12.78 100.0 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_234_+ 161–234 14611.00 39.27 285.55 40.63 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 40.00 0.11 0.78 100.0 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 9.47 0.03 0.19 59.17 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 8.56 0.02 0.17 31.69 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 7.19 0.02 0.14 17.98 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 87.00 0.23 1.70 67.97 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 4.00 0.01 0.08 100.0 SNHG25-206 lncRNA GM23248 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 167.00 81.46 3.26 95.98 MIR155HG-205 lncRNA GM23248 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 200.00 20.00 3.91 100.0 ENST00000785178 lncRNA GM23248 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 113.00 13.57 2.21 77.93 ENST00000786284 lncRNA GM23248 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 218.00 26.17 4.26 100.0 ENST00000786284 lncRNA GM23248 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 32.00 3.84 0.63 33.68 ENST00000786284 lncRNA GM23248 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 615.05 33.48 12.02 39.86 ENST00000797550 lncRNA GM23248 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 421.68 22.96 8.24 27.33 ENST00000797550 lncRNA GM23248 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 36.00 1.96 0.70 54.55 ENST00000797550 lncRNA GM23248 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 12275.00 85.95 239.90 95.77 MIR181A1HG-212 lncRNA GM23248 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 28.00 0.20 0.55 100.0 MIR181A1HG-212 lncRNA GM23248 (Cell line)