ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 65.00 4.16 1.27 31.25 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 172.00 11.02 3.36 85.15 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 120.00 7.69 2.35 47.43 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 143.00 9.16 2.79 68.75 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 345.00 22.10 6.74 95.04 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 66.00 4.23 1.29 100.0 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 103.00 6.60 2.01 100.0 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 170.00 10.89 3.32 100.0 CTC1-214 protein coding GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 1710.00 13.17 33.42 77.34 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 29.00 0.22 0.57 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 312.00 2.40 6.10 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 843.00 6.49 16.48 55.83 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 6.00 0.05 0.12 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 114.00 0.88 2.23 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 19.00 0.15 0.37 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 42.00 0.32 0.82 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 9.00 0.07 0.18 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 1488.00 11.46 29.08 47.78 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 359.00 2.76 7.02 100.0 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 5016.00 38.63 98.03 76.17 ENST00000651540 lncRNA GM23248 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 1506.00 6.48 29.43 100.0 MIRLET7A1HG-203 lncRNA GM23248 (Cell line)
ENST00000653102.1 ENST00000653102.1_9_77_+ 9–77 6547.00 91.31 127.95 100.0 MEG8-225 lncRNA GM23248 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 29426.00 89.81 575.09 100.0 SNHG29-232 lncRNA GM23248 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 8.00 0.02 0.16 100.0 SNHG29-232 lncRNA GM23248 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 68.00 0.21 1.33 100.0 SNHG29-232 lncRNA GM23248 (Cell line)