ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 1052.00 0.15 20.56 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 7.00 0.00 0.14 24.14 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 1183.00 0.17 23.12 95.87 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 58.00 0.01 1.13 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 38.00 0.01 0.74 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1138.00 0.16 22.24 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 637041.00 88.96 12449.99 99.8 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 187.00 0.03 3.65 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 791.00 0.11 15.46 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 513.00 0.07 10.03 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 365.00 0.05 7.13 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 1960.00 0.27 38.31 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 11.00 0.00 0.21 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 280.00 0.04 5.47 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 466.00 0.07 9.11 63.49 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 1830.00 0.26 35.76 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 2626.00 0.37 51.32 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 3375.00 0.47 65.96 98.66 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 27911.00 3.90 545.48 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 27.00 0.00 0.53 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 1174.00 0.16 22.94 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 24014.00 3.35 469.32 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 57.00 0.01 1.11 100.0 GAS5-230 retained intron GM23248 (Cell line)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 7.00 9.33 0.14 100.0 FTX-219 lncRNA GM23248 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 53.00 70.67 1.04 96.36 FTX-219 lncRNA GM23248 (Cell line)