ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 161.00 2.38 3.15 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 569.00 8.40 11.12 77.52 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 10.00 62.50 0.20 83.33 MIR3142HG-201 lncRNA GM23248 (Cell line)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 66.00 65.35 1.29 100.0 SNHG6-204 retained intron GM23248 (Cell line)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 902.00 20.03 17.63 100.0 MIR151A-201 miRNA GM23248 (Cell line)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 3170.00 70.40 61.95 90.83 MIR151A-201 miRNA GM23248 (Cell line)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 171.00 97.16 3.34 100.0 DENND3-221 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 1.00 0.00 0.02 33.33 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 2.00 0.01 0.04 66.67 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 1.00 0.00 0.02 50.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 2.00 0.01 0.04 66.67 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 32.00 0.14 0.63 100.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 5.00 0.02 0.10 100.0 WDR74-204 protein coding GM23248 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 4.00 22.22 0.08 100.0 HSPA8-211 retained intron GM23248 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 14.00 10.45 0.27 100.0 SCARNA9-201 lncRNA GM23248 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 68.00 0.22 1.33 100.0 TAF1D-215 retained intron GM23248 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 29769.00 97.49 581.79 100.0 TAF1D-215 retained intron GM23248 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2.00 12.50 0.04 100.0 HSPA8-215 retained intron GM23248 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 1.00 1.01 0.02 100.0 RPS2-215 retained intron GM23248 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 14374.00 84.91 280.92 86.15 ENST00000548801 lncRNA GM23248 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 191.00 33.45 3.73 100.0 ENST00000554988 lncRNA GM23248 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 14.00 2.45 0.27 100.0 ENST00000554988 lncRNA GM23248 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 638.00 43.31 12.47 100.0 SNHG14-220 retained intron GM23248 (Cell line)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 15.00 1.02 0.29 100.0 SNHG14-220 retained intron GM23248 (Cell line)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 18.00 1.22 0.35 100.0 SNHG14-220 retained intron GM23248 (Cell line)