ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 738.00 50.10 14.42 100.0 SNHG14-220 retained intron GM23248 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 302.00 99.34 5.90 100.0 TEKT4P2-201 transcribed unprocessed pseudogene GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 9279.00 89.70 181.34 98.3 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 253.00 2.45 4.94 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 11.00 0.11 0.21 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 6.00 0.06 0.12 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 87.00 0.84 1.70 100.0 RPL4-202 retained intron GM23248 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 57.00 2.40 1.11 100.0 ENST00000563103 lncRNA GM23248 (Cell line)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 4496.00 85.70 87.87 100.0 RPL4-207 retained intron GM23248 (Cell line)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 67.00 1.28 1.31 100.0 RPL4-207 retained intron GM23248 (Cell line)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 1194.00 42.75 23.33 89.1 ENST00000565336 lncRNA GM23248 (Cell line)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1012.00 36.23 19.78 85.91 ENST00000565336 lncRNA GM23248 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 82.00 1.44 1.60 100.0 RBMX-210 retained intron GM23248 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 48.00 0.84 0.94 100.0 RBMX-210 retained intron GM23248 (Cell line)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 5056.00 88.69 98.81 93.8 RBMX-210 retained intron GM23248 (Cell line)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 1.00 0.23 0.02 100.0 RPL4-214 retained intron GM23248 (Cell line)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 212.00 49.19 4.14 100.0 RPL4-214 retained intron GM23248 (Cell line)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 117.00 5.99 2.29 100.0 POLG-DT-202 lncRNA GM23248 (Cell line)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 748.21 38.33 14.62 73.43 POLG-DT-202 lncRNA GM23248 (Cell line)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 394.52 20.21 7.71 38.68 POLG-DT-202 lncRNA GM23248 (Cell line)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 92.00 24.80 1.80 100.0 ENST00000570843 lncRNA GM23248 (Cell line)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 28.00 68.29 0.55 100.0 MIR497HG-207 lncRNA GM23248 (Cell line)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 31029.00 99.49 606.41 99.65 MIR22HG-212 lncRNA GM23248 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 4106.00 88.93 80.25 91.06 SNORD53B-201 snoRNA GM23248 (Cell line)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 44.00 0.95 0.86 78.57 SNORD53B-201 snoRNA GM23248 (Cell line)