ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 158.00 3.80 3.09 100.0 GNL3-211 retained intron GM23248 (Cell line)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3690.00 88.83 72.12 100.0 GNL3-211 retained intron GM23248 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 79.00 54.11 1.54 100.0 RPL5-205 retained intron GM23248 (Cell line)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 9.00 6.16 0.18 100.0 RPL5-205 retained intron GM23248 (Cell line)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 194.00 29.26 3.79 100.0 ZBED9-AS1-201 lncRNA GM23248 (Cell line)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1111.00 90.77 21.71 100.0 RPS3A-206 retained intron GM23248 (Cell line)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 2918.00 97.72 57.03 100.0 COX7C-203 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 121.00 3.81 2.36 80.13 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 13.00 0.41 0.25 100.0 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 652.74 20.53 12.76 27.52 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 2101.88 66.10 41.08 75.72 RACK1-229 protein coding GM23248 (Cell line)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 4294.00 33.06 83.92 71.63 RACK1-230 retained intron GM23248 (Cell line)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 8494.00 65.40 166.00 94.68 RACK1-230 retained intron GM23248 (Cell line)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 1.00 20.00 0.02 100.0 RNA5SP486-201 rRNA pseudogene GM23248 (Cell line)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 54.00 88.52 1.06 100.0 SCARNA5-201 scaRNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 65.00 0.96 1.27 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 2312.00 34.12 45.18 93.34 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 624.00 9.21 12.20 89.66 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 1.00 0.01 0.02 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 451.00 6.65 8.81 65.94 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 142.00 2.10 2.78 66.05 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 161.00 2.38 3.15 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 569.00 8.40 11.12 77.52 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 51.00 0.75 1.00 100.0 RNY4-201 misc RNA GM23248 (Cell line)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 90.00 1.33 1.76 76.27 RNY4-201 misc RNA GM23248 (Cell line)