ENCFF590YKZ

Library Details

Organism: Homo Sapiens
Biosample: GM23248 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR489KNQ
Description: Part of ENCODE experiment ENCSR489KNQ. The libraries contained in this experiment come from independent growths of skin fibroblasts. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 12738.00 14.82 248.94 99.41 RPL21-209 retained intron GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 72443.00 84.26 1415.79 98.88 RPL21-209 retained intron GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 12.00 0.01 0.23 100.0 RPL21-209 retained intron GM23248 (Cell line)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 213.00 0.25 4.16 100.0 RPL21-209 retained intron GM23248 (Cell line)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 126.00 56.00 2.46 100.0 GABRE-209 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 41.00 3.76 0.80 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 2.00 0.18 0.04 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 55.00 5.05 1.07 85.94 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 10.00 0.92 0.20 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1.00 0.09 0.02 100.0 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 511.00 46.88 9.99 93.59 RPL13A-212 retained intron GM23248 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 11.00 1.75 0.21 100.0 RPL7A-207 protein coding CDS not defined GM23248 (Cell line)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 28.00 4.45 0.55 100.0 RPL7A-207 protein coding CDS not defined GM23248 (Cell line)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 242.00 38.47 4.73 59.9 RPL7A-207 protein coding CDS not defined GM23248 (Cell line)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 110.00 17.71 2.15 77.46 RN7SL2-201 misc RNA GM23248 (Cell line)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 7.00 1.13 0.14 100.0 RN7SL2-201 misc RNA GM23248 (Cell line)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 58.00 31.02 1.13 100.0 NOP56-217 protein coding CDS not defined GM23248 (Cell line)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 59.00 31.55 1.15 74.68 NOP56-217 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 11.00 0.51 0.21 35.48 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 253.00 11.67 4.94 100.0 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 240.00 11.07 4.69 100.0 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 20.00 0.92 0.39 64.52 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 661.00 30.49 12.92 83.57 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 425.00 19.60 8.31 95.08 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 13.00 0.60 0.25 100.0 RABGGTB-213 protein coding CDS not defined GM23248 (Cell line)