ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 320.00 13.61 1.38 82.9 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 23.00 0.98 0.10 100.0 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 326.00 13.86 1.40 61.98 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 541.00 23.00 2.33 89.13 7SK.1-201 misc RNA stomach (Tissue)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 2222.00 71.26 9.56 100.0 RNA5SP77-201 rRNA pseudogene stomach (Tissue)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 24470.00 59.83 105.26 100.0 SNORD114-22-201 snoRNA stomach (Tissue)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 15533.00 37.98 66.81 98.54 SNORD114-22-201 snoRNA stomach (Tissue)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 359.00 3.80 1.54 100.0 SNORD6-201 snoRNA stomach (Tissue)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 7234.00 76.48 31.12 100.0 SNORD6-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 806.00 1.90 3.47 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 16073.00 37.87 69.14 98.89 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 3678.00 8.67 15.82 89.45 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 3485.72 8.21 14.99 24.91 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 10071.89 23.73 43.32 71.97 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1347.00 3.17 5.79 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 819.00 1.93 3.52 100.0 SNORD82-201 snoRNA stomach (Tissue)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 11615.00 95.22 49.96 97.41 MIR146B-201 miRNA stomach (Tissue)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 379.00 60.06 1.63 100.0 SNHG20-201 lncRNA stomach (Tissue)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 8.00 2.07 0.03 100.0 ATP5MK-205 protein coding stomach (Tissue)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 60.00 15.54 0.26 100.0 ATP5MK-205 protein coding stomach (Tissue)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 9.00 8.41 0.04 100.0 LINC01556-201 lncRNA stomach (Tissue)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 336.00 52.58 1.45 100.0 ATAD3A-202 protein coding stomach (Tissue)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 11.00 2.80 0.05 12.09 TMC5-202 protein coding stomach (Tissue)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 6.00 42.86 0.03 100.0 ZMYM2-203 protein coding stomach (Tissue)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 81.00 3.13 0.35 100.0 RNVU1-7-201 snRNA stomach (Tissue)