ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 47.00 0.22 0.20 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 1099.00 5.15 4.73 99.46 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 340.00 3.60 1.46 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 2864.00 30.31 12.32 51.24 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 151.00 1.66 0.65 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 29524.00 86.06 126.99 99.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 61.00 0.18 0.26 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 126.00 0.37 0.54 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 168.00 0.49 0.72 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 193.00 0.56 0.83 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 75.00 0.85 0.32 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 9599.00 54.20 41.29 79.02 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 16.00 0.19 0.07 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 379.00 7.36 1.63 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 351.00 6.82 1.51 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 324.00 6.30 1.39 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_33_71_+ 33–71 1796.00 34.90 7.73 82.8 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 438.00 0.04 1.88 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 1160.00 46.53 4.99 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 2.00 0.60 0.01 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 856.00 13.03 3.68 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 7.00 0.11 0.03 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 3465.00 89.63 14.90 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 646.00 70.45 2.78 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 134.00 29.45 0.58 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA stomach (Tissue)