ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 432.00 0.77 1.86 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 2427.00 4.32 10.44 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 182.00 0.32 0.78 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 307.00 0.55 1.32 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 279.00 0.50 1.20 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 49.00 0.09 0.21 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 615.00 0.06 2.65 71.51 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 739.00 0.07 3.18 61.23 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 3909.00 0.38 16.81 92.52 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 8946.00 53.63 38.48 84.6 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 5616.00 97.30 24.16 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 228.00 22.27 0.98 80.28 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 186.00 93.47 0.80 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 287.00 1.02 1.23 98.29 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 5.00 0.02 0.02 1.71 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 13533.00 48.17 58.21 75.59 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 8513.08 64.82 36.62 81.68 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 2384.77 18.16 10.26 22.92 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 692.00 5.27 2.98 91.53 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 264313.00 97.97 1136.91 99.56 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 316.00 10.03 1.36 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 2725.00 28.84 11.72 61.6 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 163.00 0.03 0.70 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 318.00 0.04 1.37 75.53 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 3416.00 74.88 14.69 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA stomach (Tissue)