ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 19673.00 85.08 84.62 100.0 GAS5-377 lncRNA stomach (Tissue)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 14.00 87.50 0.06 100.0 MIR205HG-245 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 2142.00 38.53 9.21 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 53.00 0.95 0.23 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 57.00 1.03 0.25 100.0 ZFAS1-238 lncRNA stomach (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 8097.00 92.19 34.83 100.0 ZFAS1-242 lncRNA stomach (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 498.00 12.11 2.14 100.0 ENST00000837997 lncRNA stomach (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 2525.00 61.42 10.86 100.0 ENST00000837997 lncRNA stomach (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 7244.00 77.61 31.16 83.74 ENST00000839036 lncRNA stomach (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 53.00 9.91 0.23 100.0 ENST00000849527 lncRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 108049.00 95.71 464.76 99.2 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 187.00 0.04 0.80 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 1087.00 48.88 4.68 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 705.00 31.70 3.03 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 138.00 16.59 0.59 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 209.00 4.37 0.90 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 489.00 22.08 2.10 63.84 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 275.00 0.06 1.18 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 3.00 27.27 0.01 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 3572.00 21.41 15.36 85.72 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 20.00 0.12 0.09 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 337.00 2.02 1.45 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 312.00 21.58 1.34 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 15.00 0.00 0.06 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA stomach (Tissue)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 305.00 0.04 1.31 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA stomach (Tissue)