ENCFF583SZV

Library Details

Organism: Homo Sapiens
Biosample: stomach (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR573RGL
Description: Part of ENCODE experiment ENCSR573RGL. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's stomach tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 1.00 0.00 0.00 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 785.00 0.08 3.38 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 2680.00 0.27 11.53 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 7613.00 0.76 32.75 84.75 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 4096.00 0.41 17.62 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 153.00 0.02 0.66 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 252.00 0.03 1.08 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 3132.00 0.31 13.47 100.0 GAS5-230 retained intron stomach (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 208.00 20.76 0.89 100.0 FTX-219 lncRNA stomach (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 279.00 27.84 1.20 92.69 FTX-219 lncRNA stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 606.00 4.00 2.61 37.02 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 254.00 1.68 1.09 83.55 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 6055.00 39.97 26.04 87.98 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 1031.00 6.81 4.43 62.98 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1876.00 12.39 8.07 58.59 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 219.00 1.45 0.94 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 500.00 3.30 2.15 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 141.00 0.93 0.61 100.0 CTC1-214 protein coding stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 605.00 1.54 2.60 67.98 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 794.00 2.03 3.42 96.71 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 10.00 0.03 0.04 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 989.00 2.52 4.25 56.07 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 26.00 0.07 0.11 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 45.00 0.11 0.19 100.0 ENST00000651540 lncRNA stomach (Tissue)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 93.00 0.24 0.40 100.0 ENST00000651540 lncRNA stomach (Tissue)