ENCFF574WUG

Library Details

Organism: Homo Sapiens
Biosample: right lobe of liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR634VLA
Description: Part of ENCODE experiment ENCSR634VLA. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 957.00 32.95 7.98 73.56 MIR23AHG-201 lncRNA right lobe of liver (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 637.00 21.94 5.31 96.37 MIR23AHG-201 lncRNA right lobe of liver (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 182.00 6.27 1.52 60.47 MIR23AHG-201 lncRNA right lobe of liver (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 8159.00 33.42 68.05 100.0 MIR122HG-201 lncRNA right lobe of liver (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 5.00 3.50 0.04 100.0 ODAD3-204 nonsense mediated decay right lobe of liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 4397.00 3.80 36.67 100.0 VMP1-217 retained intron right lobe of liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 373.00 0.32 3.11 100.0 VMP1-217 retained intron right lobe of liver (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 86142.00 74.51 718.50 81.14 VMP1-217 retained intron right lobe of liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1855.00 43.28 15.47 100.0 C19orf48P-203 retained intron right lobe of liver (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 434.00 10.13 3.62 100.0 C19orf48P-203 retained intron right lobe of liver (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 3.00 50.00 0.03 100.0 ENST00000597420 lncRNA right lobe of liver (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 250430.00 78.37 2088.81 79.76 CARMN-209 lncRNA right lobe of liver (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 2843.00 51.63 23.71 100.0 PPFIA1P1-201 processed pseudogene right lobe of liver (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 563.00 55.30 4.70 100.0 SNORD114-21-201 snoRNA right lobe of liver (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 270.00 26.52 2.25 100.0 SNORD114-21-201 snoRNA right lobe of liver (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 3878.00 97.81 32.35 100.0 MIR98-201 miRNA right lobe of liver (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 186.00 80.87 1.55 100.0 SNORD113-5-201 snoRNA right lobe of liver (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 133.00 89.86 1.11 100.0 MIR15A-201 miRNA right lobe of liver (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 6.00 100.00 0.05 100.0 MIR376C-201 miRNA right lobe of liver (Tissue)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 413.00 64.33 3.44 100.0 SNHG21-206 retained intron right lobe of liver (Tissue)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 4772.00 47.75 39.80 96.76 MIR486-1-201 miRNA right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 8196.00 52.55 68.36 99.96 NOP56-219 retained intron right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 285.00 1.83 2.38 100.0 NOP56-219 retained intron right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 872.00 5.59 7.27 100.0 NOP56-219 retained intron right lobe of liver (Tissue)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 1766.00 11.32 14.73 37.99 NOP56-219 retained intron right lobe of liver (Tissue)