ENCFF574WUG

Library Details

Organism: Homo Sapiens
Biosample: right lobe of liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR634VLA
Description: Part of ENCODE experiment ENCSR634VLA. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's right lobe of liver tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 877.00 0.11 7.31 50.55 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 13365.00 1.66 111.48 69.58 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 86137.00 10.68 718.46 85.51 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 10231.00 1.27 85.34 88.87 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 567920.00 70.42 4736.96 98.34 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 184.00 0.02 1.53 100.0 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 74000.00 9.18 617.23 83.08 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 1209.00 0.15 10.08 100.0 EIF4A2-219 retained intron right lobe of liver (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 184.00 19.55 1.53 100.0 RPL7A-206 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 347.00 36.88 2.89 100.0 RPL7A-206 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 172.00 18.28 1.43 100.0 RPL7A-206 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 17617.00 2.88 146.94 95.93 RPL21-209 retained intron right lobe of liver (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 8950.00 1.47 74.65 100.0 RPL21-209 retained intron right lobe of liver (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 957.00 0.16 7.98 100.0 RPL21-209 retained intron right lobe of liver (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 579084.00 94.83 4830.08 98.35 RPL21-209 retained intron right lobe of liver (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 14.00 0.00 0.12 100.0 RPL21-209 retained intron right lobe of liver (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 113.00 34.14 0.94 100.0 GABRE-209 retained intron right lobe of liver (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 285.00 7.40 2.38 100.0 RPL13A-212 retained intron right lobe of liver (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 24.00 0.62 0.20 100.0 RPL13A-212 retained intron right lobe of liver (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 25.00 0.65 0.21 100.0 RPL13A-212 retained intron right lobe of liver (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 241.00 9.97 2.01 100.0 RPL7A-207 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 438.00 18.12 3.65 100.0 RPL7A-207 protein coding CDS not defined right lobe of liver (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 5.00 0.02 0.04 0.05 RN7SL2-201 misc RNA right lobe of liver (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 113.00 81.88 0.94 100.0 RGS11-208 retained intron right lobe of liver (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 3.00 0.10 0.03 50.0 NOP56-217 protein coding CDS not defined right lobe of liver (Tissue)